Basic Information
Locus ID:
gene-LOC107014781
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 63193185 | 63196077 | - | gene-LOC107014781 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 50,115.43 Da | 46.47 | 73.27 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 156 | 426 | 3.11459E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 391 | 426 | 6.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 303 | 341 | 0.011 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 173 | 231 | 1.3E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 256 | 290 | 2.3E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 136 | 429 | 5.95E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 83 | 429 | 6.4E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 209 | 247 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 384 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 426 | 2.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 251 | 290 | 1.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 299 | 341 | 8.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 168 | 206 | 4.8E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 258 | 299 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 174 | 215 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 174 | 206 | 9.151057 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 394 | 427 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 394 | 427 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 258 | 290 | 11.312864 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 413 | 427 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_015070335.1 | cell division cycle 20.2, cofactor of APC complex-like [Solanum pennellii] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology