Basic Information
Locus ID:
gene-LOC107014596
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Di-glucose binding within endoplasmic reticulum
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 676207 | 686100 | + | gene-LOC107014596 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 112,032.85 Da | 35.30 | 94.05 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 216 | 230 | 1.3 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 366 | 380 | 0.15 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 715 | 971 | 6.2E-37 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 121 | 175 | 2.3E-7 | IPR001611 |
| Pfam | PF11721 | Malectin domain | 466 | 648 | 4.1E-28 | IPR021720 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 696 | 975 | 9.44E-63 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 84 | 405 | 5.1E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 212 | 326 | 1.4E-25 | IPR032675 |
| Gene3D | G3DSA:2.60.120.430 | - | 465 | 654 | 1.1E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 791 | 992 | 1.3E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 327 | 447 | 9.4E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 60 | 211 | 1.1E-34 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 682 | 788 | 2.1E-31 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 714 | 985 | 34.138569 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 720 | 743 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53440.1 | Leucine-rich repeat transmembrane protein kinase. | 0 |
| RefSeq | XP_015070053.1 | probable LRR receptor-like serine/threonine-protein kinase At1g53420 isoform X1 [Solanum pennellii] | 0 |
| C0LGG9 | Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana OX=3702 GN=At1g53440 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Salicaceae | Populus euphratica | 1 | populus_peu09879 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616834, gene-LOC132618246 |
| Solanaceae | Solanum chilense | 1 | SOLCI006585800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014596 |