Basic Information
Locus ID:
gene-LOC107014592
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 36242807 | 36258619 | + | gene-LOC107014592 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 54,227.05 Da | 65.23 | 62.25 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 388 | 445 | 2.6E-25 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 215 | 270 | 8.9E-23 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 379 | 447 | 2.75E-29 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 212 | 272 | 1.19E-24 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 202 | 273 | 4.4E-26 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 372 | 448 | 2.7E-35 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 213 | 271 | 1.6E-33 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 387 | 446 | 1.2E-39 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 382 | 447 | 35.599514 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 208 | 272 | 23.054714 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 212 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.1 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | XP_015070047.1 | probable WRKY transcription factor 4 isoform X1 [Solanum pennellii] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology