Basic Information
Locus ID:
gene-LOC107014547
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 67040551 | 67042806 | + | gene-LOC107014547 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 73,642.43 Da | 43.12 | 87.90 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 358 | 622 | 3.43277E-92 | - |
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 22 | 269 | 1.47554E-69 | IPR001220 |
| Pfam | PF00139 | Legume lectin domain | 22 | 279 | 2.3E-65 | IPR001220 |
| Pfam | PF00069 | Protein kinase domain | 353 | 619 | 1.7E-52 | IPR000719 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 20 | 282 | 1.07E-52 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 333 | 633 | 2.16E-81 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 428 | 633 | 7.7E-61 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 21 | 281 | 7.5E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 337 | 427 | 2.2E-31 | - |
| SMART | SM00220 | serkin_6 | 352 | 623 | 8.5E-47 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 352 | 635 | 39.93351 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 472 | 484 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 358 | 380 | - | IPR017441 |
| ProSitePatterns | PS00307 | Legume lectins beta-chain signature. | 139 | 145 | - | IPR019825 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 639 | 662 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15530.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_015069973.1 | L-type lectin-domain containing receptor kinase S.1 [Solanum pennellii] | 0 |
| Q9M9E0 | L-type lectin-domain containing receptor kinase S.1 OS=Arabidopsis thaliana OX=3702 GN=LECRKS1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18789 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30139870 |
| Apiaceae | Apium graveolens | 1 | Ag9G00575 |
| Arecaceae | Cocos nucifera | 1 | scaffold139380G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696642 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G33985 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G15530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007025m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g13890.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g026320.2N, BniB05g024760.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1903 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2071 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g03250 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g09400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.674 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022174 |
| Posidoniaceae | Posidonia oceanica | 11 | gene.Posoc01g06860, gene.Posoc01g06890, gene.Posoc01g17230 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1070 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14748 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5039 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12628 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000010l.54 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008707 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17036 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8706 |
| Salicaceae | Populus euphratica | 3 | populus_peu28705, populus_peu30130, populus_peu30131 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632599 |
| Solanaceae | Solanum chilense | 1 | SOLCI005418400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014547 |