halophFGD

Basic Information

Locus ID: gene-LOC107014401

Species & Taxonomic ID: Solanum pennellii & 28526

Genome Assembly: GCF_001406875.1

Description: Translation initiation factor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	31604853	31615133	+	gene-LOC107014401

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.35	145,681.14 Da	43.82	76.02	-0.81

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16266	IF2_aeIF5B_IV	1179	1274	2.01692E-31	-
CDD	cd03703	aeIF5B_II	941	1050	4.48623E-51	-
CDD	cd01887	IF2_eIF5B	718	929	1.68696E-80	-
Pfam	PF11987	Translation-initiation factor 2	1054	1157	3.1E-22	IPR023115
Pfam	PF03144	Elongation factor Tu domain 2	955	1033	3.6E-10	IPR004161
Pfam	PF00009	Elongation factor Tu GTP binding domain	719	928	9.6E-33	IPR000795
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	714	1007	3.4E-62	IPR027417
SUPERFAMILY	SSF52156	Initiation factor IF2/eIF5b, domain 3	1041	1171	2.75E-35	IPR036925
SUPERFAMILY	SSF50447	Translation proteins	1175	1307	6.87E-31	IPR009000
Gene3D	G3DSA:3.40.50.300	-	709	938	6.2E-70	IPR027417
Gene3D	G3DSA:3.40.50.10050	-	1060	1163	3.9E-38	IPR036925
Gene3D	G3DSA:2.40.30.10	Translation factors	939	1059	4.5E-52	-
Gene3D	G3DSA:2.40.30.10	Translation factors	1171	1308	2.4E-58	-
TIGRFAM	TIGR00231	small_GTP: small GTP-binding protein domain	720	844	5.4E-16	IPR005225
ProSiteProfiles	PS51722	Translational (tr)-type guanine nucleotide-binding (G) domain profile.	715	932	44.43055	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	835	844	5.4E-7	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	783	793	5.4E-7	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	719	732	5.4E-7	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	799	810	5.4E-7	IPR000795
MobiDBLite	mobidb-lite	consensus disorder prediction	340	354	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	244	278	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	105	124	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	668	713	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	365	383	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	550	590	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	680	698	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	301	331	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	77	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	512	641	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	96	139	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	613	640	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	391	461	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	534	549	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	591	612	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	182	461	-	-
Coils	Coil	Coil	419	491	-	-
Coils	Coil	Coil	577	612	-	-
Coils	Coil	Coil	375	408	-	-

Gene Ontology

Molecular Function:

GO:0003924 (GTPase activity) GO:0005525 (GTP binding)

KEGG Pathway

KO Term:

K03243 (translation initiation factor 5B)

Pathway:

ko03013 (Nucleocytoplasmic transport) map03013 (Nucleocytoplasmic transport)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G76810.1	eukaryotic translation initiation factor 2 (eIF-2) family protein.
RefSeq	XP_015069779.1	eukaryotic translation initiation factor 5B-like isoform X1 [Solanum pennellii]
Swiss-Prot	Q10251	Eukaryotic translation initiation factor 5B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC56F8.03 PE=1 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg6070
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15301, gene_245
Amaranthaceae	Atriplex hortensis	3	Ah003421, Ah018262, Ah018421
Amaranthaceae	Beta vulgaris	3	BVRB_3g050350, BVRB_7g173810, BVRB_9g202210
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg14893, Sbi_jg28723, Sbi_jg2920, Sbi_jg31007 ... Sbi_jg31009, Sbi_jg55702
Amaranthaceae	Salicornia europaea	7	Seu_jg22981, Seu_jg22982, Seu_jg26226, Seu_jg6833 ... Seu_jg6939, Seu_jg6940, Seu_jg6959
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00004375, GOSA_00004376, GOSA_00017916
Amaranthaceae	Suaeda glauca	2	Sgl01135, Sgl06220
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000003077, gene:ENSEOMG00000021883 ... gene:ENSEOMG00000022784, gene:ENSEOMG00000031997, gene:ENSEOMG00000044257
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0006900, CQ.Regalona.r1.3AG0006930
Anacardiaceae	Pistacia vera	1	pistato.v30037970
Apiaceae	Apium graveolens	6	Ag3G00748, Ag3G00749, Ag3G01911, Ag4G02445, Ag4G02446 ... Ag7G00454
Arecaceae	Cocos nucifera	2	COCNU_14G000450, scaffold033353G000040
Arecaceae	Phoenix dactylifera	2	gene-LOC103720357, gene-LOC103721040
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.1583.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G06402, Ftri12G27292, Ftri9G10744
Brassicaceae	Arabidopsis thaliana	5	AT1G21160.1, AT1G76720.1, AT1G76810.1, AT1G76820.1 ... AT2G27700.2
Brassicaceae	Eutrema salsugineum	4	Thhalv10006634m.g.v1.0, Thhalv10018018m.g.v1.0 ... Thhalv10021382m.g.v1.0, Thhalv10022147m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g31970.v2.2
Brassicaceae	Brassica nigra	4	BniB02g016020.2N, BniB02g016030.2N, BniB03g009000.2N ... BniB05g073240.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G1632
Casuarinaceae	Casuarina glauca	1	Cgl08G1673
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g04590
Dunaliellaceae	Dunaliella salina	1	Dusal.0041s00031.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g24390
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG06.718
Plantaginaceae	Plantago ovata	8	Pov_00011481, Pov_00011596, Pov_00011597, Pov_00011598 ... Pov_00012015, Pov_00015017, Pov_00015018, Pov_00023099
Plumbaginaceae	Limonium bicolor	2	Lb2G10385, Lb3G16650
Poaceae	Echinochloa crus-galli	6	AH05.3560, BH05.1205, BH05.3558, CH01.2697, CH05.1503 ... CH05.3712
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0360980, gene-QOZ80_5AG0391570 ... gene-QOZ80_5BG0409430, gene-QOZ80_5BG0439620
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.1HG0094710.1
Poaceae	Lolium multiflorum	2	gene-QYE76_015006, gene-QYE76_042706
Poaceae	Oryza coarctata	3	Oco02G013470, Oco09G018380, Oco10G018310
Poaceae	Oryza sativa	4	LOC_Os01g40150.1, LOC_Os01g40170.1, LOC_Os05g51500.1 ... LOC_Os12g31880.1
Poaceae	Paspalum vaginatum	3	gene-BS78_08G078500, gene-BS78_08G078600 ... gene-BS78_09G258100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0505892, Pt_Chr0703558
Poaceae	Sporobolus alterniflorus	11	Chr01G016380, Chr04G015670, Chr04G024780, Chr06G016320 ... Chr06G016340, Chr06G016350, Chr07G023610, Chr0G020300, Chr0G030010, Chr12G020410, Chr18G015880
Poaceae	Thinopyrum elongatum	4	Tel1E01G740900, Tel1E01G741100, Tel1E01G742100 ... Tel7E01G813100
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG064300, gene_TRIDC1BG073510 ... gene_TRIDC7AG066570, gene_TRIDC7BG060760
Poaceae	Triticum aestivum	6	TraesCS1A02G438600.2, TraesCS1B02G472500.1 ... TraesCS1D02G446400.1, TraesCS1D02G446900.2, TraesCS7A02G479800.2, TraesCS7B02G382100.1
Poaceae	Zea mays	1	Zm00001eb345280_P001
Poaceae	Zoysia japonica	2	nbis-gene-13527, nbis-gene-48615
Poaceae	Zoysia macrostachya	2	Zma_g25096, Zma_g27484
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.629, evm.TU.LG03.129, evm.TU.LG03.17 ... evm.TU.LG04.140, evm.TU.LG04.143
Posidoniaceae	Posidonia oceanica	1	gene.Posoc08g14760
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_8_RagTag.1614
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-19623, nbisL1-mrna-8731
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-402, nbisL1-mrna-8952
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-15078, nbisL1-mrna-15079, nbisL1-mrna-8068 ... nbisL1-mrna-8069
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000018l.50, evm.TU.utg000023l.36
Rhizophoraceae	Kandelia obovata	1	Maker00003101
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-19721, nbisL1-mrna-9392
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-23779
Salicaceae	Populus euphratica	5	populus_peu00417, populus_peu18706, populus_peu18723 ... populus_peu29630, populus_peu29631
Solanaceae	Lycium barbarum	1	gene-LOC132636476
Solanaceae	Solanum chilense	2	SOLCI001496400, SOLCI003795700
Solanaceae	Solanum pennellii	4	gene-LOC107014299, gene-LOC107014401, gene-LOC107017076 ... gene-LOC107023346
Tamaricaceae	Reaumuria soongarica	2	STRG.5392_chr02_+, gene_17626
Tamaricaceae	Tamarix chinensis	1	TC03G1943
Zosteraceae	Zostera marina	4	Zosma01g35560.v3.1, Zosma04g20870.v3.1, Zosma277g00050.v3.1 ... Zosma277g00060.v3.1