Basic Information
Locus ID:
gene-LOC107014353
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
A domain family that is part of the cupin metalloenzyme superfamily.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 54539368 | 54551974 | + | gene-LOC107014353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 187,569.45 Da | 43.62 | 68.77 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02373 | JmjC domain, hydroxylase | 1511 | 1608 | 5.2E-16 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 1206 | 1639 | 6.32E-37 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1191 | 1634 | 1.3E-155 | - |
| SMART | SM00384 | AT_hook_2 | 719 | 731 | 18.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 687 | 699 | 360.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 793 | 807 | 440.0 | IPR017956 |
| SMART | SM00558 | cupin_9 | 1308 | 1625 | 4.9E-72 | IPR003347 |
| SMART | SM00384 | AT_hook_2 | 39 | 51 | 6.4 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 119 | 131 | 390.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 375 | 385 | 89.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 671 | 683 | 420.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 831 | 843 | 23.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 312 | 324 | 49.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 247 | 259 | 1.1 | IPR017956 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 1327 | 1625 | 24.52281 | IPR003347 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 886 | 931 | 8.668251 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 450 | 465 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 511 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 580 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 465 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1667 | 1686 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 696 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 527 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00990.1 | Transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_015069710.1 | uncharacterized protein LOC107014353 [Solanum pennellii] | 0 |
| Q8VYB9 | Lysine-specific demethylase JMJ27 OS=Arabidopsis thaliana OX=3702 GN=JMJ27 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology