Basic Information
Locus ID:
gene-LOC107014248
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 72656506 | 72658682 | - | gene-LOC107014248 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.15 | 71,655.61 Da | 45.99 | 93.39 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 27 | 58 | 4.0E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 58 | 1.96E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 125 | 393 | 1.31E-14 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 87 | 400 | 4.4E-15 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 60 | 9.9E-7 | - |
| SMART | SM00256 | fbox_2 | 29 | 66 | 0.0037 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 23 | 57 | 10.239312 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015069587.1 | uncharacterized protein LOC107014248 [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah003914 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633328 |
| Solanaceae | Solanum chilense | 2 | SOLCI004334800, SOLCI006256100 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107012592, gene-LOC107013651, gene-LOC107013656 ... |