Basic Information
Locus ID:
gene-LOC107014240
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 27658448 | 27660380 | + | gene-LOC107014240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.22 | 26,868.24 Da | 57.79 | 67.09 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 129 | 171 | 6.2E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 129 | 177 | 9.56E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 189 | 3.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 130 | 170 | 4.6E-8 | IPR001841 |
| SMART | SM00744 | ringv_2 | 129 | 171 | 0.0044 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 130 | 171 | 12.828597 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_015069578.1 | probable E3 ubiquitin-protein ligase RHB1A [Solanum pennellii] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg37761 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0385s00009.v1.0 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015083 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132620328 |
| Solanaceae | Solanum chilense | 2 | SOLCI001107600, SOLCI003716500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014240 |