Basic Information
Locus ID:
gene-LOC107014089
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 67099408 | 67103013 | + | gene-LOC107014089 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 51,617.00 Da | 47.77 | 73.07 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 28 | 339 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 41 | 337 | 1.2E-85 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 23 | 392 | 2.01E-120 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 20 | 400 | 2.2E-131 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 9 | 454 | 1.8E-199 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 43 | 60 | 2.5E-48 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 252 | 270 | 2.5E-48 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 114 | 131 | 2.5E-48 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 135 | 155 | 2.5E-48 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 274 | 284 | 2.8E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 157 | 180 | 2.8E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 189 | 204 | 2.8E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 176 | 192 | 2.5E-48 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 235 | 248 | 2.5E-48 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 440 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_015069441.1 | histone deacetylase 6-like [Solanum pennellii] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology