Basic Information
Locus ID:
gene-LOC107014001
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 68762125 | 68762998 | - | gene-LOC107014001 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 23,881.03 Da | 33.19 | 102.07 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 139 | 201 | 3.98133E-18 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 62 | 124 | 3.1E-10 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 139 | 200 | 1.0E-13 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 52 | 202 | 6.87E-40 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 43 | 132 | 5.3E-18 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 133 | 208 | 1.4E-22 | - |
| SMART | SM00054 | efh_1 | 139 | 167 | 8.5E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 63 | 91 | 0.23 | IPR002048 |
| SMART | SM00054 | efh_1 | 175 | 203 | 1.5E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 99 | 127 | 0.58 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 135 | 170 | 13.676544 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 59 | 94 | 13.397589 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 95 | 130 | 10.329096 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 171 | 206 | 13.843916 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 72 | 84 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 184 | 196 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 108 | 120 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 148 | 160 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_015069359.1 | probable calcium-binding protein CML15 [Solanum pennellii] | 0 |
| Q6L5F4 | Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica OX=39947 GN=CML14 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology