Basic Information
Locus ID:
gene-LOC107013793
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 1386183 | 1400490 | + | gene-LOC107013793 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 26,389.24 Da | 61.91 | 77.75 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 70 | 1.05388E-41 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 7.3E-26 | IPR002100 |
| Pfam | PF01486 | K-box region | 87 | 173 | 1.6E-23 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 89 | 1.06E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 98 | 3.6E-29 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 2.5E-38 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.594788 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 89 | 179 | 14.116346 | IPR002487 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.8E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.8E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.8E-30 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 215 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 215 | - | - |
| Coils | Coil | Coil | 89 | 109 | - | - |
| Coils | Coil | Coil | 145 | 172 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62165.1 | AGAMOUS-like 42. Encodes a MADS box transcription factor. Expressed in quiescent center. | 0 |
| RefSeq | XP_015069157.1 | MADS-box protein AGL42-like [Solanum pennellii] | 0 |
| Q9FIS1 | MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology