Basic Information
Locus ID:
gene-LOC107013656
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 73003093 | 73004948 | + | gene-LOC107013656 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 65,146.40 Da | 44.14 | 98.24 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 33 | 61 | 8.7E-7 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 149 | 386 | 4.71E-13 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 18 | 61 | 2.09E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 29 | 62 | 2.2E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 108 | 498 | 5.2E-12 | IPR032675 |
| SMART | SM00256 | fbox_2 | 32 | 71 | 0.0012 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 26 | 60 | 9.735919 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015069004.1 | uncharacterized protein LOC107013656 [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah003914 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633328 |
| Solanaceae | Solanum chilense | 2 | SOLCI004334800, SOLCI006256100 |
| Solanaceae | Solanum pennellii | 5 | gene-LOC107012592, gene-LOC107013651, gene-LOC107013656 ... |