Basic Information
Locus ID:
gene-LOC107013633
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 70498022 | 70507920 | - | gene-LOC107013633 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 114,444.95 Da | 37.15 | 83.09 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 492 | 0.0039 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 829 | 862 | 0.017 | IPR001680 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 890 | 1021 | 5.49E-8 | IPR011044 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 416 | 953 | 1.39E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 874 | 1010 | 1.3E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 645 | 873 | 1.1E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 314 | 587 | 7.3E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 740 | 777 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 914 | 953 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 5.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 536 | 0.15 | IPR001680 |
| SMART | SM00320 | WD40_4 | 823 | 862 | 2.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 780 | 820 | 2.8 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 2.0E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 405 | 445 | 0.95 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.1E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 451 | 492 | 4.0E-4 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.369186 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 830 | 871 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 830 | 864 | 9.915599 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 458 | 501 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.628511 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 479 | 493 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1009 | 1039 | - | - |
| Coils | Coil | Coil | 1038 | 1039 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_015068987.1 | protein TOPLESS [Solanum pennellii] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology