Basic Information
Locus ID:
gene-LOC107013629
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 69808987 | 69822037 | - | gene-LOC107013629 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 154,159.09 Da | 46.36 | 85.47 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 1040 | 1305 | 3.32412E-91 | - |
| Pfam | PF12819 | Malectin-like domain | 560 | 921 | 1.0E-34 | IPR024788 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1037 | 1246 | 5.6E-45 | IPR001245 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 194 | 231 | 6.5E-11 | - |
| Pfam | PF02190 | ATP-dependent protease La (LON) substrate-binding domain | 278 | 463 | 1.8E-17 | IPR003111 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1013 | 1305 | 1.75E-78 | IPR011009 |
| SUPERFAMILY | SSF48452 | TPR-like | 43 | 180 | 1.48E-16 | IPR011990 |
| SUPERFAMILY | SSF57850 | RING/U-box | 189 | 257 | 1.48E-16 | - |
| SUPERFAMILY | SSF88697 | PUA domain-like | 278 | 461 | 3.73E-33 | IPR015947 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 35 | 177 | 7.1E-17 | IPR011990 |
| Gene3D | G3DSA:2.60.120.430 | - | 557 | 714 | 2.2E-18 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 737 | 923 | 9.8E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 181 | 272 | 2.6E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 995 | 1109 | 4.1E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1110 | 1330 | 8.2E-60 | - |
| Gene3D | G3DSA:2.30.130.40 | - | 276 | 378 | 1.4E-25 | - |
| SMART | SM00028 | tpr_5 | 40 | 73 | 31.0 | IPR019734 |
| SMART | SM00464 | lon_5 | 277 | 478 | 5.3E-9 | IPR003111 |
| SMART | SM00220 | serkin_6 | 1034 | 1307 | 3.0E-33 | IPR000719 |
| SMART | SM00028 | tpr_5 | 131 | 164 | 5.3 | IPR019734 |
| SMART | SM00184 | ring_2 | 194 | 231 | 4.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 194 | 232 | 12.931868 | IPR001841 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1034 | 1307 | 36.739227 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1040 | 1062 | - | IPR017441 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 209 | 218 | - | IPR017907 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1154 | 1166 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1314 | 1357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1331 | 1345 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G61350.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_027771445.1 | probable receptor-like protein kinase At5g61350 [Solanum pennellii] | 0 |
| Q9FLJ8 | Probable receptor-like protein kinase At5g61350 OS=Arabidopsis thaliana OX=3702 GN=At5g61350 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U7V9X7 | LOW QUALITY PROTEIN: probable receptor-like protein kinase At5g61350 OS=Nicotiana sylvestris OX=4096 GN=LOC104211655 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18579 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19654 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000792 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g114180 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31041, Sbi_jg58242 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25846 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004700 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54772, Sgl60074 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004283, gene:ENSEOMG00000023203 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0020160, CQ.Regalona.r1.5BG0021510 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30144410 |
| Apiaceae | Apium graveolens | 2 | Ag4G00380, Ag5G00594 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G002540 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705242 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1354.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri2G11864, Ftri9G29455 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G18660.4 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007493m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g16630.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g028140.2N, BniB04g033240.2N, BniB06p000230.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1849 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2017 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g09810 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0118s00011.v1.0, Dusal.1511s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g19700 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.622 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041554 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01814 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3249, BH01.3633, CH01.3819 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2BG0206680, gene-QOZ80_3AG0228920 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0374770.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_066228, gene-QYE76_066250 |
| Poaceae | Oryza coarctata | 2 | Oco05G016780, Oco06G017590 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G318400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G013710, Chr07G013100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G246300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG024660, gene_TRIDC4BG028770 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G162000.1, TraesCS4B02G151200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb020460_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47236 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3484 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.17, evm.TU.LG04.3211, evm.TU.LG09.1283 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g17510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.602 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28760 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11267 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1749 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.384 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000745 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14519 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1575 |
| Salicaceae | Populus euphratica | 1 | populus_peu29895 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632913 |
| Solanaceae | Solanum chilense | 1 | SOLCI000962400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013629 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10991 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2360 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23890.v3.1 |