Basic Information
Locus ID:
gene-LOC107013066
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
AAA-type ATPase family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 71788417 | 71790534 | + | gene-LOC107013066 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 63,777.91 Da | 48.02 | 82.37 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 153 | 291 | 2.20754E-22 | - |
| CDD | cd18139 | HLD_clamp_RarA | 298 | 400 | 4.39481E-12 | - |
| Pfam | PF12002 | MgsA AAA+ ATPase C terminal | 426 | 572 | 2.9E-57 | IPR021886 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 177 | 292 | 5.1E-17 | IPR003959 |
| Pfam | PF00627 | UBA/TS-N domain | 4 | 34 | 4.1E-9 | IPR015940 |
| Pfam | PF16193 | AAA C-terminal domain | 326 | 425 | 3.9E-26 | IPR032423 |
| SUPERFAMILY | SSF46934 | UBA-like | 4 | 40 | 2.22E-10 | IPR009060 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 136 | 361 | 2.46E-46 | IPR027417 |
| SUPERFAMILY | SSF48019 | post-AAA+ oligomerization domain-like | 410 | 577 | 2.1E-66 | IPR008921 |
| Gene3D | G3DSA:3.40.50.300 | - | 127 | 296 | 9.5E-47 | IPR027417 |
| Gene3D | G3DSA:1.10.3710.10 | - | 504 | 581 | 1.7E-20 | - |
| Gene3D | G3DSA:1.20.272.10 | - | 400 | 503 | 9.3E-45 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 2 | 51 | 1.1E-12 | - |
| Gene3D | G3DSA:1.10.8.60 | - | 298 | 371 | 1.3E-16 | - |
| SMART | SM00165 | uba_6 | 4 | 36 | 3.9E-6 | IPR015940 |
| SMART | SM00382 | AAA_5 | 173 | 298 | 4.2E-14 | IPR003593 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 1 | 37 | 12.595088 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 385 | - | - |
| Coils | Coil | Coil | 220 | 240 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24290.1 | AAA-type ATPase family protein. | 0 |
| RefSeq | XP_015068537.1 | ATPase WRNIP1 [Solanum pennellii] | 0 |
| Q8CG07 | ATPase WRNIP1 OS=Rattus norvegicus OX=10116 GN=Wrnip1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19016 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25097 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027059 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g132400 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg13485, Sbi_jg13486, Sbi_jg52394 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9457 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023135 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33479, Sgl38840 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003817, gene:ENSEOMG00000004173 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0021810 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30279280, pistato.v30280870 |
| Apiaceae | Apium graveolens | 1 | Ag11G04148 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G003070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716204 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2604.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G00566 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G24290.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009719m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g23470.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g032490.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2293 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g12230 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g20630 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.373 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031704 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1508, evm.TU.LG20.370 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g03940 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.1049 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23736 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6311 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21742 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000027l.1, add.evm.TU.utg000027l.2 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00017371, Maker00017425 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20993 |
| Salicaceae | Populus euphratica | 1 | populus_peu18404 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633167 |
| Solanaceae | Solanum chilense | 1 | SOLCI006476400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013066 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10264 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0341 |
| Zosteraceae | Zostera marina | 1 | Zosma06g23610.v3.1 |