Basic Information
Locus ID:
gene-LOC107012935
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 4497531 | 4499159 | + | gene-LOC107012935 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 26,805.04 Da | 55.63 | 71.59 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 197 | 234 | 9.71062E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 194 | 239 | 2.8E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 185 | 242 | 2.83E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 190 | 244 | 5.0E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 197 | 234 | 1.6E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 197 | 235 | 10.792683 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 121 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03965.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015068394.1 | uncharacterized protein LOC107012935 [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology