Basic Information
Locus ID:
gene-LOC107012870
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 23928674 | 23931601 | + | gene-LOC107012870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 96,429.24 Da | 40.06 | 105.30 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 63 | 1.5E-11 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 230 | 273 | 1.2E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 116 | 175 | 2.3E-7 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 600 | 847 | 5.1E-31 | IPR001245 |
| SUPERFAMILY | SSF52047 | RNI-like | 253 | 493 | 5.89E-37 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 599 | 867 | 9.13E-56 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 21 | 327 | 4.08E-57 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 661 | 866 | 5.7E-44 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 201 | 524 | 1.0E-77 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 23 | 200 | 8.0E-45 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 588 | 660 | 2.0E-13 | - |
| SMART | SM00369 | LRR_typ_2 | 236 | 260 | 6.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 452 | 475 | 30.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 138 | 162 | 60.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 186 | 211 | 39.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 90 | 114 | 55.0 | IPR003591 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 22 | 5.0 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 454 | 477 | 7.165205 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 591 | 852 | 27.735867 | IPR000719 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 452 | 465 | 7.9E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 239 | 252 | 7.9E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06940.1 | Leucine-rich repeat receptor-like protein kinase family protein. | 0 |
| RefSeq | XP_015068315.1 | probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 isoform X1 [Solanum pennellii] | 0 |
| Q9FL51 | Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana OX=3702 GN=At5g06940 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15939, jg4372 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19072 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021687 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g060970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59254, Sbi_jg63379 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23513 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018421 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl23762 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013500, gene:ENSEOMG00000029572 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0021250 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30187100 |
| Apiaceae | Apium graveolens | 1 | AgUnG01348 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G012070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717743 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1243.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G33055 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G06940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012646m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35930.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053900.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1109 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1278 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g08490 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2442 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006615 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4085, BH09.1445, CH09.1555 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0313910, gene-QOZ80_4BG0345070 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0174810.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044667 |
| Poaceae | Oryza coarctata | 2 | Oco07G008350, Oco08G008250 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g39650.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G131200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302333, Pt_Chr0302386 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G010820, Chr25G008940, Chr26G008900 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G582400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG048640, gene_TRIDC2BG051300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G330000.1, TraesCS2B02G352300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb424770_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7420 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21450 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.524, evm.TU.LG15.421 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1142 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3779 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16334 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18858 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.547 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005536 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12451 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5592 |
| Salicaceae | Populus euphratica | 2 | populus_peu11002, populus_peu26138 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634023 |
| Solanaceae | Solanum chilense | 1 | SOLCI006941300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012870 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.6957_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2411 |