Basic Information
Locus ID:
gene-LOC107012415
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 54001557 | 54005192 | - | gene-LOC107012415 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 25,187.85 Da | 67.38 | 59.05 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 132 | 214 | 4.48624E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 134 | 204 | 1.5E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 122 | 225 | 3.09E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 128 | 219 | 5.8E-20 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 133 | 210 | 1.4E-4 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 132 | 218 | 12.048673 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 44 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_015067743.1 | RNA-binding protein 2-like [Solanum pennellii] | 0 |
| G7ID19 | RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology