Basic Information
Locus ID:
gene-LOC107012189
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Timeless protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 2477329 | 2493570 | - | gene-LOC107012189 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 146,404.64 Da | 49.88 | 86.04 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04821 | Timeless protein | 25 | 284 | 1.2E-55 | IPR006906 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1175 | 1196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1135 | 1211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 916 | 950 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 890 | 915 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 671 | 685 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 889 | 950 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1197 | 1211 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 552 | 586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1138 | 1153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 575 | - | - |
| Coils | Coil | Coil | 939 | 959 | - | - |
| Coils | Coil | Coil | 252 | 272 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52910.2 | - | 0 |
| RefSeq | XP_015067443.1 | protein timeless homolog [Solanum pennellii] | 0 |
| P53840 | Topoisomerase 1-associated factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TOF1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2229 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3263 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018756 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052860 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15175, Sbi_jg56009 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26486 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019977 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01477, Sgl06642 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000003818, gene:ENSEOMG00000029528 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0004000, CQ.Regalona.r1.3BG0004140 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30089960, pistato.v30184530, pistato.v30184560 ... |
| Apiaceae | Apium graveolens | 1 | Ag10G02554 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G003470 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716005 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2854.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G10774 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G52910.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012488m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g15090.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g031030.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1525 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1624 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g01940 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0321s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g15400 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11758 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2822 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010478 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb7G33602, Lb7G33603 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1342, BH05.1513, CH05.1713 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0362620, gene-QOZ80_5BG0410790 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0090300.1 |
| Poaceae | Oryza coarctata | 2 | Oco09G004540, Oco10G004200 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g11980.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G240900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502954, Pt_Chr0505616 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr18G016640, Chr22G000890, Chr22G000900 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G677400, Tel5E01G665300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG060320, gene_TRIDC1BG069060 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G409600.1, TraesCS1B02G439600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb296310_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-13622 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27407 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1478, evm.TU.LG14.750 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc09g08280, gene.Posoc09g08290 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_4_RagTag.60, evm.TU.Scaffold_4_RagTag.61 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29279 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20543, nbisL1-mrna-3116 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2216 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.34 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000235 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17630 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6333 |
| Salicaceae | Populus euphratica | 2 | populus_peu28131, populus_peu28132 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632004 |
| Solanaceae | Solanum chilense | 1 | SOLCI003387100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012189 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5238 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2286 |
| Zosteraceae | Zostera marina | 1 | Zosma05g13800.v3.1 |