Basic Information
Locus ID:
gene-LOC107012132
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
CAF1 family ribonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 70776052 | 70777553 | + | gene-LOC107012132 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 31,176.11 Da | 33.81 | 88.17 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 17 | 136 | 7.2E-12 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 158 | 243 | 3.0E-6 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 12 | 265 | 6.9E-92 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 269 | 2.0E-101 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_004235935.1 | probable CCR4-associated factor 1 homolog 7 [Solanum lycopersicum] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology