Basic Information
Locus ID:
gene-LOC107012117
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 49232690 | 49240483 | + | gene-LOC107012117 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 101,000.39 Da | 66.72 | 64.23 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 832 | 872 | 4.34219E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 831 | 877 | 6.7E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 832 | 878 | 1.44E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 814 | 883 | 5.7E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 833 | 872 | 10.704165 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 702 | 734 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 704 | 723 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 283 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 246 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_027771628.1 | uncharacterized protein LOC107012117 isoform X1 [Solanum pennellii] | 0 |
| TrEMBL | M1BEW0 | Glu-rich protein OS=Solanum tuberosum OX=4113 GN=102600663 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology