Basic Information
Locus ID:
gene-LOC107012095
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Periodic tryptophan protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 73172733 | 73179684 | + | gene-LOC107012095 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 99,241.05 Da | 39.71 | 88.79 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 330 | 591 | 4.42219E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 378 | 408 | 4.6E-8 | IPR001680 |
| Pfam | PF04003 | Dip2/Utp12 Family | 782 | 887 | 1.5E-28 | IPR007148 |
| Pfam | PF00400 | WD domain, G-beta repeat | 551 | 579 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 415 | 451 | 2.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 500 | 537 | 6.7E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 132 | 167 | 0.0019 | IPR001680 |
| SUPERFAMILY | SSF101908 | Putative isomerase YbhE | 23 | 186 | 3.27E-17 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 127 | 584 | 1.01E-68 | IPR036322 |
| SUPERFAMILY | SSF63829 | Calcium-dependent phosphotriesterase | 548 | 743 | 1.24E-11 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 32 | 256 | 2.1E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 257 | 458 | 1.5E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 459 | 671 | 6.1E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 412 | 451 | 4.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 130 | 169 | 3.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 370 | 409 | 1.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 454 | 495 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 83 | 120 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 327 | 367 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 541 | 579 | 6.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 602 | 641 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 498 | 537 | 2.8E-10 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 419 | 460 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 547 | 579 | 8.913786 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 547 | 579 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 377 | 418 | 14.685726 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 505 | 538 | 12.736494 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 377 | 413 | 11.998316 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 505 | 546 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 419 | 452 | 11.471045 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 438 | 452 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 524 | 538 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 396 | 410 | 2.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 438 | 452 | 2.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 524 | 538 | 2.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 261 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15440.1 | periodic tryptophan protein 2. | 0 |
| RefSeq | XP_015067310.1 | periodic tryptophan protein 2 [Solanum pennellii] | 0 |
| Q8VYZ5 | Periodic tryptophan protein 2 OS=Arabidopsis thaliana OX=3702 GN=PWP2 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18220 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26184 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010627 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g220060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11529, Sbi_jg46467 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20778 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005218, GOSA_00005219 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55968, Sgl61139 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018899, gene:ENSEOMG00000036144 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0010310, CQ.Regalona.r1.9AG0014320 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30127660, pistato.v30128740 |
| Apiaceae | Apium graveolens | 1 | Ag5G00128 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G004220, COCNU_14G002730 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717859 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3011.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G32814 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G15440.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006752m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g13810.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g006450.2N, BniB06g040850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0274 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0289 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g03270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0148s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g25070 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6450 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.439 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001276, Pov_00030923 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18322 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.1700, BH05.1849, CH03.1656, CH05.1946 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0043400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0086720.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015952 |
| Poaceae | Oryza coarctata | 2 | Oco09G014450, Oco10G014420 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g44320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G205900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504045, Pt_Chr0504133 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G016830, Chr12G019980, Chr18G014120, Chr22G003380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G561200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG050250, gene_TRIDC1BG057060 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G340000.1, TraesCS1B02G352300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb293800_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25110 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28620 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.1553, evm.TU.LG18.1258, evm.TU.LG20.626 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g22400 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1212 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-6853, nbisL1-mrna-6916 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5925 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17024 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.355 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004036 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16353, nbisL1-mrna-19659 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18058 |
| Salicaceae | Populus euphratica | 3 | populus_peu02844, populus_peu33735, populus_peu33736 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633331 |
| Solanaceae | Solanum chilense | 1 | SOLCI003331300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012095 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10126 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2159 |
| Zosteraceae | Zostera marina | 1 | Zosma06g00730.v3.1 |