Basic Information
Locus ID:
gene-LOC107012083
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3622782 | 3624559 | + | gene-LOC107012083 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 37,503.33 Da | 68.90 | 63.97 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00447 | HSF-type DNA-binding | 26 | 115 | 3.3E-32 | IPR000232 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 23 | 115 | 9.98E-34 | IPR036390 |
| SUPERFAMILY | SSF101447 | Formin homology 2 domain (FH2 domain) | 146 | 156 | 2.2E-5 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 19 | 116 | 2.8E-37 | IPR036388 |
| SMART | SM00415 | hsfneu3 | 22 | 115 | 3.8E-56 | IPR000232 |
| ProSitePatterns | PS00434 | HSF-type DNA-binding domain signature. | 65 | 89 | - | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 77 | 89 | 3.1E-20 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 26 | 49 | 3.1E-20 | IPR000232 |
| PRINTS | PR00056 | Heat shock factor (HSF) domain signature | 64 | 76 | 3.1E-20 | IPR000232 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 314 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 340 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 270 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 305 | - | - |
| Coils | Coil | Coil | 183 | 210 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62020.1 | heat shock transcription factor B2A. member of Heat Stress Transcription Factor (Hsf) family | 0 |
| RefSeq | XP_015067295.1 | heat stress transcription factor B-2a [Solanum pennellii] | 0 |
| Q9SCW4 | Heat stress transcription factor B-2a OS=Arabidopsis thaliana OX=3702 GN=HSFB2A PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology