Basic Information
Locus ID:
gene-LOC107012025
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 52621880 | 52627924 | - | gene-LOC107012025 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 42,276.94 Da | 48.81 | 86.35 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 157 | 206 | 6.04414E-32 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 349 | 391 | 8.21759E-24 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 6.99189E-31 | - |
| Pfam | PF00627 | UBA/TS-N domain | 163 | 201 | 2.0E-14 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 4.0E-19 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 273 | 328 | 5.6E-23 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 353 | 388 | 1.9E-12 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 333 | 396 | 3.12E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 269 | 334 | 1.57E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 80 | 2.99E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 160 | 213 | 2.96E-12 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 345 | 392 | 1.3E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 156 | 206 | 2.7E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.1E-28 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 262 | 329 | 4.3E-28 | IPR036353 |
| SMART | SM00165 | uba_6 | 163 | 203 | 1.6E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 353 | 390 | 4.0E-9 | IPR015940 |
| SMART | SM00727 | CBM | 271 | 314 | 1.0E-8 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 4.2E-22 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 395 | 9.2E-116 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 19.411978 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 161 | 204 | 12.787865 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 350 | 391 | 14.643341 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 299 | 321 | 1.7E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 364 | 378 | 1.7E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 379 | 394 | 1.7E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 347 | 363 | 1.7E-34 | IPR004806 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_027770316.1 | ubiquitin receptor RAD23d isoform X1 [Solanum pennellii] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology