Basic Information
Locus ID:
gene-LOC107012022
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
DNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 100811458 | 100817335 | + | gene-LOC107012022 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 73,459.07 Da | 56.93 | 81.35 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 443 | 576 | 5.56487E-61 | - |
| CDD | cd17920 | DEXHc_RecQ | 245 | 442 | 3.34238E-93 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 460 | 566 | 9.9E-17 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 253 | 421 | 1.7E-18 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 579 | 648 | 4.0E-13 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 291 | 587 | 4.63E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 443 | 651 | 3.1E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 215 | 442 | 1.5E-82 | IPR027417 |
| SMART | SM00487 | ultradead3 | 247 | 451 | 5.5E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 485 | 567 | 4.6E-25 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 245 | 650 | 4.5E-152 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 457 | 607 | 19.561478 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 259 | 435 | 20.034494 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_015067227.1 | ATP-dependent DNA helicase Q-like 1 [Solanum pennellii] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology