Basic Information
Locus ID:
gene-LOC107011861
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 58995254 | 58999581 | + | gene-LOC107011861 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 55,521.25 Da | 43.32 | 83.46 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 214 | 246 | 1.1E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 206 | 249 | 3.27E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 205 | 246 | 2.5E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 252 | 352 | 3.0E-8 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 206 | 246 | 9.656436 | IPR001810 |
| ProSiteProfiles | PS51379 | 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. | 416 | 446 | 7.222718 | IPR017896 |
| ProSitePatterns | PS00198 | 4Fe-4S ferredoxin-type iron-sulfur binding region signature. | 425 | 436 | - | IPR017900 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26000.1 | Ribonuclease inhibitor. | 0 |
| RefSeq | XP_015067016.1 | F-box protein SKIP14 [Solanum pennellii] | 0 |
| Q9LU91 | F-box protein SKIP14 OS=Arabidopsis thaliana OX=3702 GN=SKIP14 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology