Basic Information
Locus ID:
gene-LOC107011765
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 25858856 | 25876274 | + | gene-LOC107011765 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 111,522.67 Da | 47.22 | 80.63 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 270 | 599 | 3.32411E-88 | - |
| CDD | cd18793 | SF2_C_SNF | 800 | 955 | 9.8453E-55 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 715 | 752 | 2.5E-8 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 849 | 945 | 1.4E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 291 | 677 | 8.6E-70 | IPR000330 |
| SUPERFAMILY | SSF57850 | RING/U-box | 711 | 772 | 3.98E-12 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 255 | 599 | 7.58E-46 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 607 | 1002 | 2.95E-57 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 695 | 793 | 3.8E-14 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 240 | 330 | 1.3E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 466 | 612 | 2.4E-31 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 360 | 451 | 9.0E-12 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 614 | 1003 | 7.2E-66 | IPR027417 |
| SMART | SM00490 | helicmild6 | 862 | 945 | 2.1E-20 | IPR001650 |
| SMART | SM00487 | ultradead3 | 266 | 576 | 1.7E-28 | IPR014001 |
| SMART | SM00184 | ring_2 | 715 | 753 | 0.0061 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 835 | 998 | 14.019406 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 715 | 751 | 11.102496 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 285 | 561 | 12.231831 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 730 | 739 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 184 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 127 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_015066879.1 | helicase-like transcription factor CHR28 isoform X1 [Solanum pennellii] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology