Basic Information
Locus ID:
gene-LOC107011710
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 46372084 | 46397889 | - | gene-LOC107011710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 73,211.26 Da | 45.51 | 76.20 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 390 | 667 | 3.92459E-56 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 391 | 418 | 0.019 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 549 | 583 | 2.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 632 | 667 | 0.0036 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 423 | 459 | 1.6E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 381 | 667 | 1.58E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 517 | 668 | 4.1E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 346 | 516 | 2.8E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 629 | 668 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 586 | 625 | 29.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 506 | 542 | 34.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 463 | 503 | 0.01 | IPR001680 |
| SMART | SM00320 | WD40_4 | 545 | 583 | 3.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 420 | 459 | 4.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 379 | 418 | 0.0011 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 470 | 512 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 427 | 459 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 427 | 459 | 11.365591 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 386 | 427 | 9.104886 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 636 | 668 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 636 | 668 | 11.497408 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32551.1 | LisH dimerisation motif;WD40/YVTN repeat-like-containing domain. LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. | 0 |
| RefSeq | XP_015066800.1 | uncharacterized protein LOC107011710 isoform X1 [Solanum pennellii] | 0 |
| Q9FUY2 | Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana OX=3702 GN=LUG PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology