Basic Information
Locus ID:
gene-LOC107011483
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 38025424 | 38031818 | - | gene-LOC107011483 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 40,498.07 Da | 53.04 | 80.13 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.65442E-31 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 154 | 203 | 2.37424E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 161 | 198 | 1.3E-13 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 339 | 374 | 1.3E-12 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 259 | 314 | 4.6E-23 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 3.8E-19 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 91 | 5.3E-23 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 157 | 208 | 1.42E-11 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 319 | 382 | 3.89E-16 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 256 | 320 | 1.83E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 250 | 315 | 2.3E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 331 | 378 | 4.5E-24 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 3.1E-29 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 153 | 203 | 1.2E-21 | - |
| SMART | SM00165 | uba_6 | 160 | 200 | 5.4E-5 | IPR015940 |
| SMART | SM00727 | CBM | 257 | 300 | 1.9E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 339 | 376 | 6.4E-10 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.1E-20 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 382 | 4.1E-117 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 158 | 201 | 12.426409 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 19.499079 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 336 | 377 | 14.643341 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 350 | 364 | 4.2E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 285 | 307 | 4.2E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 365 | 380 | 4.2E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 333 | 349 | 4.2E-35 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 233 | - | - |
| Coils | Coil | Coil | 286 | 306 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_015066492.1 | ubiquitin receptor RAD23d isoform X1 [Solanum pennellii] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology