Basic Information
Locus ID:
gene-LOC107011010
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 46784388 | 46794943 | - | gene-LOC107011010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 106,891.32 Da | 59.29 | 80.38 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 243 | 359 | 1.37337E-19 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 836 | 897 | 8.1E-5 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 250 | 357 | 1.2E-6 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 832 | 906 | 1.41E-10 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 127 | 384 | 3.89E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 701 | 765 | 1.6E-10 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 127 | 386 | 2.1E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 829 | 912 | 5.1E-9 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 700 | 772 | 1.6E-6 | - |
| SMART | SM00577 | forpap2 | 194 | 368 | 3.7E-11 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 833 | 901 | 1.9E-7 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 702 | 766 | 2.2E-7 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 701 | 767 | 11.431301 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 133 | 381 | 15.196723 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 832 | 902 | 12.693668 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 532 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 909 | 927 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 682 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 909 | 954 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_015065799.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Solanum pennellii] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology