Basic Information
Locus ID:
gene-LOC107010374
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 107112345 | 107114379 | - | gene-LOC107010374 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 27,292.97 Da | 45.94 | 84.62 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 52 | 96 | 3.03466E-29 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 52 | 99 | 1.9E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 48 | 107 | 2.6E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 108 | 1.8E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 54 | 94 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 54 | 95 | 13.064645 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 69 | 78 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015065141.1 | E3 ubiquitin ligase rnf-5-like isoform X1 [Solanum pennellii] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology