Basic Information
Locus ID:
gene-LOC107010152
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
RCK
Description:
Sec63 Brl domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 53343989 | 53356878 | + | gene-LOC107010152 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 225,297.47 Da | 42.24 | 90.37 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18795 | SF2_C_Ski2 | 1015 | 1206 | 3.18882E-56 | - |
| CDD | cd18023 | DEXHc_HFM1 | 803 | 1016 | 9.04002E-103 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1045 | 1192 | 1.4E-7 | IPR001650 |
| Pfam | PF01535 | PPR repeat | 514 | 540 | 8.0E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 118 | 142 | 0.0013 | IPR002885 |
| Pfam | PF02889 | Sec63 Brl domain | 1313 | 1628 | 5.1E-43 | IPR004179 |
| Pfam | PF01535 | PPR repeat | 382 | 410 | 4.6E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 656 | 682 | 0.41 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 87 | 116 | 0.004 | IPR002885 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 807 | 993 | 5.3E-23 | IPR011545 |
| Pfam | PF01535 | PPR repeat | 587 | 612 | 0.14 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 279 | 326 | 3.9E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 147 | 193 | 3.2E-11 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 486 | 512 | 9.5E-4 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 411 | 458 | 3.4E-10 | IPR002885 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 820 | 1208 | 4.05E-42 | IPR027417 |
| SUPERFAMILY | SSF158702 | Sec63 N-terminal domain-like | 1340 | 1528 | 2.09E-28 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 550 | 689 | 2.5E-19 | IPR011990 |
| Gene3D | G3DSA:3.40.50.300 | - | 794 | 1015 | 3.0E-147 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1016 | 1217 | 3.0E-147 | IPR027417 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 427 | 549 | 4.0E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 42 | 143 | 8.0E-15 | IPR011990 |
| Gene3D | G3DSA:1.10.10.10 | - | 1224 | 1311 | 1.9E-21 | IPR036388 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 337 | 413 | 3.2E-11 | IPR011990 |
| Gene3D | G3DSA:1.10.3380.10 | - | 1317 | 1467 | 4.7E-31 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 144 | 225 | 1.9E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 226 | 336 | 2.1E-26 | IPR011990 |
| SMART | SM00490 | helicmild6 | 1106 | 1194 | 1.4E-11 | IPR001650 |
| SMART | SM00973 | Sec63_2 | 1313 | 1630 | 1.5E-49 | IPR004179 |
| SMART | SM00487 | ultradead3 | 800 | 1020 | 4.0E-23 | IPR014001 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 149 | 183 | 6.9E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 514 | 548 | 2.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 382 | 407 | 0.0015 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 250 | 279 | 1.3E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 413 | 446 | 8.5E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 281 | 314 | 2.1E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 411 | 445 | 11.334042 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 512 | 546 | 9.525427 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 481 | 511 | 8.911594 | IPR002885 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 813 | 1008 | 19.606951 | IPR014001 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 147 | 181 | 11.345003 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 248 | 278 | 9.952918 | IPR002885 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1038 | 1239 | 12.167069 | IPR001650 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 380 | 410 | 9.306201 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 279 | 313 | 12.199985 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 85 | 119 | 9.021208 | IPR002885 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27730.1 | ATP binding;ATP-dependent helicases;DNA helicases. DNA helicase required for interference-sensitive meiotic crossover events. | 0 |
| RefSeq | XP_027770022.1 | DExH-box ATP-dependent RNA helicase DExH17 [Solanum pennellii] | 0 |
| Q5D892 | DExH-box ATP-dependent RNA helicase DExH17 OS=Arabidopsis thaliana OX=3702 GN=MER3 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34978 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17001 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035312 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g023810 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21423, Sbi_jg22432 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16312 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016449 |
| Amaranthaceae | Suaeda glauca | 11 | Sgl62864, Sgl62865, Sgl62867, Sgl62871, Sgl62873, Sgl62906 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020046, gene:ENSEOMG00000050620 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0019780, CQ.Regalona.r1.2AG0021500 |
| Apiaceae | Apium graveolens | 1 | Ag9G00461 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G011010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120103745 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2666.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G15993 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G27730.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003551m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g16840.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g007140.2N, BniB07g047820.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1858 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1938 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g18880 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0006s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g34300 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.324 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027856 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G22475, Lb4G25190 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.2621, BH07.2433, CH07.2502 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0193160 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0378290.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_068091 |
| Poaceae | Oryza coarctata | 4 | Oco03G015380, Oco04G016020, Oco12G006860, Oco18G001190 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G198100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102655, Pt_Chr0107913 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G015500, Chr15G009160 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G307400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG018550, gene_TRIDC4BG030700 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G136200.1, TraesCS4B02G168700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb184840_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-9475, nbis-gene-9476 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13901 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.Contig33.4 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g38670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1906 |
| Rhizophoraceae | Carallia pectinifolia | 8 | nbisL1-mrna-2353, nbisL1-mrna-2360, nbisL1-mrna-2363 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12371 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3075 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.76 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001796, Maker00002279 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12048 |
| Salicaceae | Populus euphratica | 1 | populus_peu01053 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132624766 |
| Solanaceae | Solanum chilense | 1 | SOLCI001040600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107010152 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13837 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3595 |
| Zosteraceae | Zostera marina | 1 | Zosma03g20620.v3.1 |