Basic Information
Locus ID:
gene-LOC107009889
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Conserved gene of
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 31725388 | 31727304 | - | gene-LOC107009889 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.53 | 19,236.94 Da | 49.51 | 77.18 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 59 | 103 | 9.85595E-9 | - |
| Pfam | PF13639 | Ring finger domain | 58 | 103 | 2.0E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 58 | 109 | 2.36E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 131 | 1.6E-11 | IPR013083 |
| SMART | SM00249 | PHD_3 | 58 | 103 | 0.0084 | IPR001965 |
| SMART | SM00184 | ring_2 | 59 | 102 | 8.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 59 | 103 | 11.279532 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_015064683.1 | E3 ubiquitin-protein ligase WAV3-like [Solanum pennellii] | 0 |
| F4JSV3 | Probable E3 ubiquitin-protein ligase EDA40 OS=Arabidopsis thaliana OX=3702 GN=EDA40 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 3 | Ftri13G26327, Ftri3G03542, Ftri8G07275 |
| Brassicaceae | Brassica nigra | 1 | BniB05g046860.2N |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_044936, gene-QYE76_061876, gene-QYE76_070877 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3AG034800 |
| Solanaceae | Solanum chilense | 1 | SOLCI004069200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009889 |