Basic Information
Locus ID:
gene-LOC107009862
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
SOC1
Description:
MADS-box protein SOC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 95778054 | 95789662 | + | gene-LOC107009862 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 25,140.53 Da | 61.12 | 81.34 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 78 | 2.32605E-43 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 2.5E-26 | IPR002100 |
| Pfam | PF01486 | K-box region | 89 | 173 | 3.6E-26 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 84 | 2.35E-32 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 96 | 3.3E-30 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 1.0E-40 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.510681 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 89 | 179 | 15.036835 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 2.4E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 2.4E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 2.4E-30 | IPR002100 |
| Coils | Coil | Coil | 145 | 172 | - | - |
| Coils | Coil | Coil | 89 | 109 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45660.1 | AGAMOUS-like 20. Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA. | 0 |
| RefSeq | XP_015064668.1 | MADS-box protein SOC1 [Solanum pennellii] | 0 |
| O64645 | MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology