Basic Information
Locus ID:
gene-LOC107009608
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 91727024 | 91731447 | + | gene-LOC107009608 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 29,874.21 Da | 50.20 | 91.31 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 47 | 79 | 1.2E-7 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 40 | 106 | 1.27E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 34 | 139 | 2.5E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 47 | 102 | 10.069786 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 66 | 75 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 194 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69330.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015064443.1 | E3 ubiquitin-protein ligase RNF182-like [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology