Basic Information
Locus ID:
gene-LOC107009317
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 45719816 | 45722920 | + | gene-LOC107009317 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 63,110.21 Da | 29.59 | 92.22 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 29 | 188 | 3.09219E-91 | - |
| CDD | cd02005 | TPP_PDC_IPDC | 389 | 570 | 3.05952E-87 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 433 | 558 | 3.3E-14 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 26 | 191 | 7.8E-35 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 223 | 340 | 3.1E-22 | IPR012000 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 26 | 199 | 1.03E-42 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 218 | 365 | 2.62E-33 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 391 | 582 | 3.75E-41 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 24 | 198 | 5.6E-60 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 382 | 569 | 1.2E-55 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 213 | 375 | 1.4E-41 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 23 | 582 | 4.5E-209 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_015064113.1 | pyruvate decarboxylase 1 [Solanum pennellii] | 0 |
| P51850 | Pyruvate decarboxylase 1 OS=Pisum sativum OX=3888 GN=PDC1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology