Basic Information
Locus ID:
gene-LOC107009272
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Carbohydrate-binding protein of the ER
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 8828324 | 8832191 | - | gene-LOC107009272 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.78 | 122,176.85 Da | 36.70 | 86.08 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 506 | 774 | 1.91678E-90 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 893 | 1061 | 5.4E-20 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 506 | 773 | 2.5E-45 | IPR001245 |
| Pfam | PF12819 | Malectin-like domain | 44 | 409 | 1.2E-42 | IPR024788 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 483 | 771 | 6.34E-76 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 839 | 1065 | 4.85E-30 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 841 | 941 | 4.3E-12 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 463 | 576 | 2.0E-33 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 943 | 1084 | 1.1E-20 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 224 | 410 | 1.4E-28 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 41 | 196 | 2.0E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 577 | 787 | 2.3E-59 | - |
| SMART | SM00220 | serkin_6 | 500 | 778 | 6.6E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 865 | 1086 | 14.958733 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 500 | 777 | 37.205647 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 622 | 634 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51550.1 | Malectin/receptor-like protein kinase family protein. Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception. | 0 |
| RefSeq | XP_015064066.2 | putative receptor-like protein kinase At5g39000 [Solanum pennellii] | 0 |
| Q9SCZ4 | Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana OX=3702 GN=FER PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 1 | Ftri18G05091 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028085 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132624729, gene-LOC132625058 |
| Solanaceae | Solanum chilense | 1 | SOLCI001066700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009272 |