Basic Information
Locus ID:
gene-LOC107008958
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Belongs to the GRAS family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 57848528 | 57850559 | - | gene-LOC107008958 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 56,346.42 Da | 50.11 | 69.80 | -0.46 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37650.1 | GRAS family transcription factor. Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. Movement requires sequences within the GRAS and VHIID domains. | 0 |
| RefSeq | XP_015063669.1 | protein SHORT-ROOT [Solanum pennellii] | 0 |
| Q9SZF7 | Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg10958, jg17354, jg19633, jg39935 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15822 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah019506, Ah027528 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g057810, BVRB_6g128210 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg13178, Sbi_jg52667, Sbi_jg6676 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15259, Seu_jg9185 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl01788, Sgl06948, Sgl34590, Sgl40004 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000004045, gene:ENSEOMG00000015518 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0010330, CQ.Regalona.r1.3BG0010670 ... |
| Apiaceae | Apium graveolens | 2 | Ag3G02791, Ag4G01152 |
| Arecaceae | Cocos nucifera | 5 | COCNU_02G012500, COCNU_05G003700, COCNU_13G007130 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103708579, gene-LOC103715985, gene-LOC103716950 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.493.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G17710, Ftri18G33492, Ftri7G17571 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G37650.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024885m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g35300.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g088670.2N, BniB03g014380.2N, BniB05g001360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1434 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G1435, Cgl09G1035 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g01740, gene.Cymno08g02120 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g27640, gene.Thate06g14790 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-10568, nbisL1-mrna-6669, nbisL1-mrna-7128 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2568, evm.TU.LG11.244 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00025164, Pov_00030215 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05466, Lb1G05470 |
| Poaceae | Echinochloa crus-galli | 5 | AH09.2131, BH01.3560, CH01.3773, CH08.1683, CH08.2536 |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_3AG0229420, gene-QOZ80_3BG0274110 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0130150.1.CDS1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_016854, gene-QYE76_039987, gene-QYE76_040021 ... |
| Poaceae | Oryza coarctata | 4 | Oco05G016750, Oco06G017220, Oco13G011360, Oco14G012120 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g31880.1, LOC_Os07g39820.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G314900, gene-BS78_02G332900 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr04G013830, Chr07G013230, Chr0G020750, Chr19G003220 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G358900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG024710, gene_TRIDC2BG028490 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G192600.1.cds1, TraesCS2B02G214600.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb020850_P001, Zm00001eb108090_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32809, nbis-gene-539 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5463, Zma_g6745 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.1440, evm.TU.LG05.78, evm.TU.LG07.1443 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g25800, gene.Posoc05g06110 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.1202, evm.TU.Scaffold_6_RagTag.1109 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-15547, nbisL1-mrna-17373, nbisL1-mrna-764 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19582, nbisL1-mrna-6684 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11982, nbisL1-mrna-2459, nbisL1-mrna-958 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000011l.266, add.evm.TU.utg000011l.440 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00002031, Maker00006863, Maker00008307 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-19246, nbisL1-mrna-22243, nbisL1-mrna-22972 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-1903, nbisL1-mrna-3302, nbisL1-mrna-4141 |
| Salicaceae | Populus euphratica | 3 | populus_peu22571, populus_peu23224, populus_peu23991 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609340, gene-LOC132623383 |
| Solanaceae | Solanum chilense | 2 | SOLCI005473300, SOLCI006362000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008958, gene-LOC107027115 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.4486_chr03_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1927 |
| Zosteraceae | Zostera marina | 1 | Zosma04g04030.v3.1 |