Basic Information
Locus ID:
gene-LOC107008847
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
LYK4
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 55866836 | 55870237 | + | gene-LOC107008847 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 70,433.73 Da | 42.60 | 88.44 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 381 | 621 | 1.4E-38 | IPR000719 |
| Pfam | PF01476 | LysM domain | 188 | 232 | 0.0031 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 339 | 621 | 4.1E-63 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 423 | 640 | 2.6E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 323 | 421 | 4.4E-15 | - |
| ProSiteProfiles | PS51782 | LysM domain profile. | 186 | 231 | 9.321362 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 283 | 633 | 33.007851 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 258 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_015063528.1 | lysM domain receptor-like kinase 4 [Solanum pennellii] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology