Basic Information
Locus ID:
gene-LOC107008537
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 85179616 | 85183025 | - | gene-LOC107008537 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 67,373.04 Da | 41.92 | 94.38 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 343 | 600 | 1.2E-26 | IPR001245 |
| Pfam | PF00560 | Leucine Rich Repeat | 91 | 112 | 0.43 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 114 | 173 | 3.4E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 24 | 60 | 6.6E-9 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 344 | 599 | 1.08E-49 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 32 | 209 | 7.94E-36 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 416 | 607 | 1.9E-43 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 311 | 413 | 3.7E-14 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 136 | 4.0E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 137 | 240 | 1.7E-17 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 340 | 607 | 25.813644 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 346 | 368 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48480.1 | receptor-like kinase 1. Arabidopsis thaliana receptor-like protein kinase (RKL1) gene | 0 |
| RefSeq | XP_015063111.1 | probable inactive receptor kinase At1g48480 [Solanum pennellii] | 0 |
| Q9LP77 | Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana OX=3702 GN=RKL1 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology