Basic Information
Locus ID:
gene-LOC107008334
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Ubiquitin fusion degradation protein 1 homolog isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 107965182 | 107971147 | - | gene-LOC107008334 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 35,372.42 Da | 60.54 | 63.69 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 13 | 184 | 5.5E-80 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 6 | 107 | 8.5E-45 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 109 | 182 | 7.4E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 307 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_010315336.1 | ubiquitin fusion degradation protein 1 homolog isoform X1 [Solanum lycopersicum] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology