Basic Information
Locus ID:
gene-LOC107008257
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
DNA (cytosine-5)-methyltransferase CMT3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 917365 | 926784 | - | gene-LOC107008257 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 96,780.49 Da | 38.01 | 85.57 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04716 | BAH_plantDCM_I | 139 | 260 | 3.25546E-58 | - |
| CDD | cd18635 | CD_CMT3_like | 404 | 460 | 3.56611E-29 | - |
| Pfam | PF01426 | BAH domain | 141 | 248 | 3.4E-9 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 469 | 819 | 3.7E-32 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 405 | 459 | 1.9E-11 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 289 | 820 | 3.89E-75 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 398 | 464 | 2.93E-13 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 275 | 381 | 8.8E-13 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 403 | 837 | 1.3E-217 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 75 | 244 | 1.5E-44 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 623 | 786 | 1.3E-217 | - |
| SMART | SM00298 | chromo_7 | 404 | 463 | 3.0E-11 | IPR000953 |
| SMART | SM00439 | BAH_4 | 140 | 259 | 3.0E-13 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 405 | 458 | 13.498701 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 140 | 259 | 16.928211 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 289 | 827 | 45.054195 | IPR001525 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 475 | 487 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 428 | 448 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 518 | 532 | 7.0E-13 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 290 | 306 | 7.0E-13 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 564 | 577 | 7.0E-13 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 402 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_015062698.1 | DNA (cytosine-5)-methyltransferase 1 [Solanum pennellii] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology