Basic Information
Locus ID:
gene-LOC107008157
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 100130592 | 100134633 | + | gene-LOC107008157 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 55,897.73 Da | 48.22 | 84.82 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 378 | 404 | 6.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 155 | 406 | 2.33E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 157 | 483 | 1.1E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 141 | 181 | 250.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 363 | 404 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 320 | 360 | 0.013 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 103 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_015062570.1 | LOW QUALITY PROTEIN: autophagy-related protein 18a-like [Solanum pennellii] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology