Basic Information
Locus ID:
gene-LOC107008045
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 88070635 | 88074074 | + | gene-LOC107008045 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 106,059.41 Da | 29.38 | 102.84 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 342 | 362 | 0.55 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 680 | 946 | 2.9E-44 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 222 | 244 | 0.097 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 73 | 3.2E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 61 | 358 | 1.6E-53 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 309 | 590 | 3.74E-46 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 674 | 948 | 7.96E-71 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 191 | 1.0E-39 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 192 | 264 | 4.8E-19 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 342 | 606 | 4.5E-67 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 648 | 753 | 1.5E-21 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 754 | 959 | 1.3E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 265 | 341 | 3.9E-19 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 485 | 509 | 39.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 438 | 460 | 320.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 678 | 952 | 1.4E-30 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 268 | 292 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 220 | 244 | 16.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 316 | 340 | 44.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 678 | 956 | 36.824028 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 798 | 810 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20270.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | 0 |
| RefSeq | XP_015062424.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Solanum pennellii] | 0 |
| O65440 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology