Basic Information
Locus ID:
gene-LOC107008009
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 76754043 | 76762685 | - | gene-LOC107008009 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 85,144.69 Da | 43.63 | 76.36 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00130 | PAS | 115 | 216 | 3.67561E-12 | IPR000014 |
| CDD | cd13999 | STKc_MAP3K-like | 488 | 734 | 1.1347E-130 | - |
| Pfam | PF00989 | PAS fold | 107 | 216 | 8.6E-14 | IPR013767 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 483 | 734 | 1.4E-67 | IPR001245 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | 106 | 216 | 2.79E-21 | IPR035965 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 470 | 732 | 6.12E-84 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 475 | 559 | 1.7E-30 | - |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | 115 | 219 | 8.3E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 560 | 759 | 2.1E-63 | - |
| SMART | SM00091 | pas_2 | 106 | 172 | 8.0E-9 | IPR000014 |
| SMART | SM00220 | serkin_6 | 482 | 738 | 1.2E-58 | IPR000719 |
| TIGRFAM | TIGR00229 | sensory_box: PAS domain S-box protein | 106 | 219 | 1.7E-17 | IPR000014 |
| ProSiteProfiles | PS50113 | PAC domain profile. | 177 | 229 | 8.992642 | IPR000700 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 482 | 738 | 43.283268 | IPR000719 |
| ProSiteProfiles | PS50112 | PAS repeat profile. | 104 | 155 | 14.577922 | IPR000014 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 601 | 613 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 705 | 727 | 1.8E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 642 | 652 | 1.8E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 661 | 683 | 1.8E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 556 | 569 | 1.8E-11 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 595 | 613 | 1.8E-11 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 359 | - | - |
| Coils | Coil | Coil | 15 | 42 | - | - |
| Coils | Coil | Coil | 731 | 751 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49470.3 | PAS domain-containing protein tyrosine kinase family protein. | 0 |
| RefSeq | XP_015062381.1 | probable serine/threonine-protein kinase DDB_G0272254 [Solanum pennellii] | 0 |
| Q9C9U5 | Probable serine/threonine-protein kinase SIS8 OS=Arabidopsis thaliana OX=3702 GN=SIS8 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology