Basic Information
Locus ID:
gene-LOC107007837
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 97251898 | 97253345 | - | gene-LOC107007837 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.92 | 33,309.01 Da | 48.61 | 87.95 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 250 | 292 | 6.2E-12 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 31 | 93 | 2.7E-13 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 228 | 295 | 1.52E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 217 | 297 | 1.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 250 | 291 | 1.8E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 250 | 292 | 12.238477 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015062124.1 | putative RING-H2 finger protein ATL21A [Solanum pennellii] | 0 |
| Q9C7E9 | RING-H2 finger protein ATL20 OS=Arabidopsis thaliana OX=3702 GN=ATL20 PE=2 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645453 |
| Solanaceae | Solanum chilense | 1 | SOLCI004987300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007837 |