Basic Information
Locus ID:
gene-LOC107007438
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 3835982 | 3845356 | - | gene-LOC107007438 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 84,284.06 Da | 44.13 | 95.60 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 99 | 116 | 0.57 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 145 | 204 | 7.4E-9 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 487 | 758 | 9.0E-41 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 32 | 239 | 2.77E-35 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 459 | 758 | 1.3E-68 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 277 | 5.3E-43 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 563 | 772 | 1.2E-50 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 454 | 561 | 2.8E-28 | - |
| SMART | SM00369 | LRR_typ_2 | 167 | 190 | 83.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 97 | 125 | 27.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 191 | 213 | 46.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 143 | 166 | 180.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 99 | 121 | 7.403927 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 484 | 762 | 33.233994 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 193 | 215 | 7.450131 | IPR001611 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 402 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03390.1 | STRUBBELIG-receptor family 3. | 0 |
| RefSeq | XP_015061548.1 | protein STRUBBELIG-RECEPTOR FAMILY 3 isoform X1 [Solanum pennellii] | 0 |
| Q6R2K3 | Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana OX=3702 GN=SRF3 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology