Basic Information
Locus ID:
gene-LOC107007268
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 17941774 | 17970707 | + | gene-LOC107007268 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 70,345.05 Da | 36.93 | 84.72 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 315 | 348 | 3.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 597 | 628 | 6.0E-4 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 464 | 518 | 5.5E-5 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 308 | 628 | 3.36E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 444 | 632 | 2.7E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 249 | 433 | 2.6E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 592 | 630 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 454 | 495 | 2.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 310 | 349 | 3.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 498 | 537 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 355 | 394 | 29.0 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 10 | 35 | 8.25794 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 505 | 540 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 317 | 358 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 598 | 632 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 598 | 632 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 317 | 352 | 10.601049 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 278 | - | - |
| Coils | Coil | Coil | 192 | 219 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015061302.1 | WD repeat-containing protein 91 homolog isoform X1 [Solanum pennellii] | 0 |
| Q55FJ2 | WD repeat-containing protein 91 homolog OS=Dictyostelium discoideum OX=44689 GN=wdr91 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2232 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16180 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018759 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052910 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15177, Sbi_jg56011 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26488 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019975 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01479, Sgl06644 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002901, gene:ENSEOMG00000030780 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3AG0003970 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30202830 |
| Apiaceae | Apium graveolens | 2 | Ag4G02677, Ag4G02678 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716260 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1911.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G21309 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1519 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1620 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02020 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g17190 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11759, nbisL1-mrna-11760 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2821 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010481 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24609, Lb4G25164 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1784, BH01.2108, CH01.2194 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127660, gene-QOZ80_2BG0183140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042120.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011413 |
| Poaceae | Oryza coarctata | 2 | Oco09G005670, Oco10G006310 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g23430.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G207600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502568 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G013030, Chr09G010930, Chr13G014270, Chr13G014300 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G280700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG023060, gene_TRIDC1BG027910 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G152000.5, TraesCS1B02G169400.5 ... |
| Poaceae | Zea mays | 1 | Zm00001eb221900_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19236 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16180 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc04g02760, gene.Posoc09g08210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.62 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29278 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17811 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2214, nbisL1-mrna-2215 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.35 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001199 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2316 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6332 |
| Salicaceae | Populus euphratica | 1 | populus_peu28136 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616635 |
| Solanaceae | Solanum chilense | 1 | SOLCI006434500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007268 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10793 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1520 |
| Zosteraceae | Zostera marina | 1 | Zosma05g13770.v3.1 |