Basic Information
Locus ID:
gene-LOC107007180
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 5617508 | 5626047 | + | gene-LOC107007180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 97,056.04 Da | 59.43 | 74.06 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 730 | 765 | 0.001 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 645 | 681 | 8.6E-5 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 84 | 312 | 4.98E-17 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 556 | 867 | 5.24E-54 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 83 | 323 | 1.9E-22 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 533 | 870 | 1.9E-121 | IPR015943 |
| SMART | SM00320 | WD40_4 | 550 | 588 | 0.38 | IPR001680 |
| SMART | SM00320 | WD40_4 | 599 | 638 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 641 | 681 | 3.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 684 | 723 | 0.93 | IPR001680 |
| SMART | SM00320 | WD40_4 | 774 | 813 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 727 | 765 | 4.4E-7 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 313 | 9.672616 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 648 | 690 | 13.181907 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 648 | 685 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 734 | 768 | 13.014815 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 734 | 768 | 10.811958 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 668 | 682 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 752 | 766 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 625 | 639 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 668 | 682 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 752 | 766 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 419 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_015061165.1 | protein SPA1-RELATED 4-like isoform X1 [Solanum pennellii] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology