Basic Information
Locus ID:
gene-LOC107007111
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
ATP-dependent RNA helicase-like protein DB10 isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 29301870 | 29309010 | - | gene-LOC107007111 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.70 | 66,616.07 Da | 47.49 | 72.81 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 365 | 494 | 2.2779E-62 | - |
| CDD | cd00201 | WW | 21 | 51 | 4.19277E-5 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 170 | 339 | 5.3E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 377 | 485 | 1.1E-32 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 218 | 501 | 8.87E-73 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 12 | 52 | 2.38E-8 | IPR036020 |
| Gene3D | G3DSA:2.20.70.10 | - | 15 | 66 | 3.2E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 119 | 351 | 2.4E-85 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 352 | 527 | 1.0E-58 | IPR027417 |
| SMART | SM00490 | helicmild6 | 405 | 485 | 1.5E-33 | IPR001650 |
| SMART | SM00487 | ultradead3 | 165 | 368 | 1.6E-64 | IPR014001 |
| SMART | SM00456 | ww_5 | 19 | 52 | 1.0E-6 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 177 | 351 | 29.79254 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 146 | 174 | 10.832837 | IPR014014 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 18 | 52 | 11.624801 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 380 | 524 | 25.043797 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 297 | 305 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 24 | 50 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 612 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 594 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.2 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_015061071.1 | ATP-dependent RNA helicase-like protein DB10 [Solanum pennellii] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology